Index

A

add() (config_reader.Settings method) add_component() (physical_system.System method) add_model() (parameter_space.ParameterGenerator method) add_psf_to_datafile() (data.Integrated method) AllModels (class in model)

analysis module Analysis (class in analysis) apply_CR_cut() (weight_solvers.NNLS method) assign_model_directories() (model_iterator.ModelInnerIterator method) AxisymmetricVisibleComponent (class in physical_system)

B

backup_config_file() (config_reader.Configuration method) BarDiskComponent (class in physical_system)

BarDiskComponentAngles (class in physical_system) BayesLOSVD (class in kinematics) beta_plot() (plotter.Plotter method)

C

center_v_systemic() (kinematics.BayesLOSVD method) check_generic_stopping_critera() (parameter_space.ParameterGenerator method) check_parset() (model.Model method) check_specific_stopping_critera() (parameter_space.ParameterGenerator method) (parameter_space.SpecificModels method) check_stopping_critera() (parameter_space.ParameterGenerator method) chi2_kinmap() (weight_solvers.WeightSolver method) classification_diagnostic_plot() (orblib.LegacyOrbitLibrary method) classify_orbits() (orblib.LegacyOrbitLibrary method) clip() (parameter_space.ParameterGenerator method) combine_orblibs() (orblib.LegacyOrbitLibrary method) Component (class in physical_system) comps_aphist() (analysis.Decomposition method) config_reader module

Configuration (class in config_reader) construct_nnls_matrix_and_rhs() (weight_solvers.NNLS method) convert_file_from_old_format() (kinematics.GaussHermite method) (mges.MGE method) convert_legacy_chi2_file() (model.AllModels method) convert_losvd_columns_to_one_multidimensional_column() (kinematics.BayesLOSVD method) convert_multidimensional_losvd_columns_to_univariate() (kinematics.BayesLOSVD method) convert_to_plot_coords() (data.Integrated method) copy_config_file() (config_reader.Configuration method) copy_kinematic_data() (weight_solvers.LegacyWeightSolver method) create_and_run_model() (model_iterator.ModelInnerIterator method) create_fortran_input_nnls() (weight_solvers.LegacyWeightSolver method) create_fortran_input_orblib() (orblib.LegacyOrbitLibrary method) create_model_directory() (model.Model method) CvxoptNonNegSolver (class in weight_solvers)

D

DarkComponent (class in physical_system) data module Data (class in data) decompose_orbits() (analysis.Decomposition method)

Decomposition (class in analysis) delete_staging_files() (model_iterator.ModelInnerIterator method) Discrete (class in data) duplicate_flip_and_interlace_intmoms() (orblib.LegacyOrbitLibrary method) duplicate_flip_and_interlace_orblib() (orblib.LegacyOrbitLibrary method) DynamiteLogging (class in config_reader)

E

evaluate_hermite_polynomials() (kinematics.GaussHermite method)

evaluate_losvd() (kinematics.GaussHermite method) evaluate_losvd_normalisation() (kinematics.GaussHermite method)

F

find_grid_of_valid_pqu() (physical_system.TriaxialVisibleComponent method)

FullGrid (class in parameter_space)

G

GaussHermite (class in kinematics) GeneralisedNFW (class in physical_system) generate() (parameter_space.ParameterGenerator method) get_2n_obs() (config_reader.Configuration method) get_all_bar_components() (physical_system.System method) get_all_dark_components() (physical_system.System method) get_all_dark_non_plummer_components() (physical_system.System method) get_all_kinematic_data() (physical_system.System method) get_all_mge_components() (physical_system.System method) get_best_n_models() (model.AllModels method) get_best_n_models_idx() (model.AllModels method) get_c200() (physical_system.NFW_m200_c method) get_component_from_class() (physical_system.System method) get_component_from_name() (physical_system.System method) get_data() (kinematics.GaussHermite method) (kinematics.Kinematics method) get_dh_legacy_strings() (physical_system.DarkComponent method) (physical_system.NFW_m200_c method) get_gh_expansion_coefficients() (kinematics.GaussHermite method) get_gh_model_kinematic_maps() (analysis.Analysis method) get_hermite_polynomial_coeffients() (kinematics.GaussHermite method) get_highest_order_gh_coefficient() (kinematics.GaussHermite method) get_intrinsic_masses_from_file() (mges.MGE method) get_M_stars_tot() (physical_system.VisibleComponent method) get_map_plotter() (data.Integrated method) get_mean() (kinematics.Histogram method) get_mean_sigma_gaussfit() (kinematics.Histogram method) get_ml_of_original_orblib() (model.AllModels method) get_model_directory() (model.Model method) get_model_from_directory() (model.AllModels method) get_model_from_parset() (model.AllModels method) get_model_from_row() (model.AllModels method) get_model_intrinsic_moment_constructor() (orblib.LegacyOrbitLibrary method)

get_model_velocity_scaling_factor() (model.AllModels method) get_mods_within_chi2_thresh() (model.AllModels method) get_n_cpus() (config_reader.Configuration method) get_normalisation() (kinematics.Histogram method) get_observed_mass_constraints() (weight_solvers.NNLS method) get_observed_values_and_uncertainties() (kinematics.BayesLOSVD method) (kinematics.GaussHermite method) (kinematics.Kinematics method) get_orbit_ics() (orblib.LegacyOrbitLibrary method) get_orbit_library() (orblib.LegacyOrbitLibrary method) get_orbit_library_par() (orblib.LegacyOrbitLibrary method) get_orblib() (model.Model method) (orblib.LegacyOrbitLibrary method) get_par_by_name() (physical_system.Component method) (physical_system.System method) get_par_value_from_raw_value() (parameter_space.Parameter method) get_param_value_from_raw_value() (parameter_space.ParameterSpace method) get_parameter_from_name() (parameter_space.ParameterSpace method) get_parname() (physical_system.Component method) get_parset() (parameter_space.ParameterSpace method) get_parset_from_row() (model.AllModels method) get_plots() (model_iterator.ModelIterator method) get_projected_masses_from_file() (mges.MGE method) get_raw_value_from_par_value() (parameter_space.Parameter method) get_raw_value_from_param_value() (parameter_space.ParameterSpace method) get_row_from_model() (model.AllModels method) get_sigma() (kinematics.Histogram method) get_unique_bar_component() (physical_system.System method) get_unique_triaxial_visible_component() (physical_system.System method) get_weights() (model.Model method) get_weights_and_chi2_from_orbmat_file() (weight_solvers.LegacyWeightSolver method) grid() (parameter_space.FullGrid method) grid_walk() (parameter_space.GridWalk method) GridWalk (class in parameter_space)

H

has_pops() (kinematics.BayesLOSVD method) (kinematics.GaussHermite method) (kinematics.Kinematics method)

Hernquist (class in physical_system) Histogram (class in kinematics)

I

Integrated (class in data) is_bar_disk_system() (physical_system.System method)

is_bar_disk_system_with_angles() (physical_system.System method) is_new_orblib() (model_iterator.ModelInnerIterator method)

K

kinematics module

Kinematics (class in kinematics)

L

LegacyGridSearch (class in parameter_space) LegacyOrbitLibrary (class in orblib)

LegacyWeightSolver (class in weight_solvers) load_hdf5() (kinematics.BayesLOSVD method)

M

make_best_models_table() (model.AllModels method) make_chi2_plot() (plotter.Plotter method) make_chi2_vs_model_id_plot() (plotter.Plotter method) make_empty_table() (model.AllModels method) make_output_directory_tree() (config_reader.Configuration method) map_binID_blosvd_to_binID_dynamite() (kinematics.BayesLOSVD method) mass_plot() (plotter.Plotter method) MGE (class in mges) mges module model module Model (class in model) model_iterator module

ModelInnerIterator (class in model_iterator) ModelIterator (class in model_iterator) module analysis config_reader data kinematics mges model model_iterator orblib parameter_space physical_system plotter weight_solvers

N

NFW (class in physical_system) NFW_m200_c (class in physical_system)

NNLS (class in weight_solvers) normalise() (kinematics.Histogram method)

O

orbit_distribution() (plotter.Plotter method) orbit_plot() (plotter.Plotter method)

OrbitLibrary (class in orblib) orblib module

P

par_value (parameter_space.Parameter property) Parameter (class in parameter_space) parameter_space module ParameterGenerator (class in parameter_space) ParameterSpace (class in parameter_space) physical_system module

plot_comps() (analysis.Decomposition method) plot_decomp() (analysis.Decomposition method) plot_kinematic_maps() (plotter.Plotter method) plotter module Plotter (class in plotter) Plummer (class in physical_system)

Q

qpu_plot() (plotter.Plotter method)

R

read_aperture_and_bin_files() (data.Integrated method) read_chi2() (weight_solvers.LegacyWeightSolver method) read_file_old_format() (kinematics.GaussHermite method) (mges.MGE method) read_legacy_chi2_file() (model.AllModels method) read_losvd_histograms() (orblib.LegacyOrbitLibrary method) read_model_table() (model.AllModels method) read_nnls_orbmat_rhs_and_solution() (weight_solvers.LegacyWeightSolver method) read_orbit_base() (orblib.LegacyOrbitLibrary method) read_orbit_intrinsic_moments() (orblib.LegacyOrbitLibrary method) read_orbit_property_file() (orblib.LegacyOrbitLibrary method) read_orbit_property_file_base() (orblib.LegacyOrbitLibrary method)

read_weights() (weight_solvers.LegacyWeightSolver method) rebin_orblib_to_observations() (kinematics.BayesLOSVD method) remove_all_existing_output() (config_reader.Configuration method) remove_existing_all_models_file() (config_reader.Configuration method) remove_existing_orbital_weights() (config_reader.Configuration method) remove_existing_orblibs() (config_reader.Configuration method) remove_existing_plots() (config_reader.Configuration method) remove_unused_orblibs() (model.AllModels method) ReorderLOSVDError retrofit_kinmapchi2() (model.AllModels method) run_iteration() (model_iterator.ModelInnerIterator method) (model_iterator.SplitModelIterator method)

S

save() (model.AllModels method) save_data_table() (kinematics.BayesLOSVD method) scale_x_values() (kinematics.Histogram method) set_default_hist_bins() (kinematics.BayesLOSVD method) (kinematics.GaussHermite method) set_default_hist_center() (kinematics.BayesLOSVD method) (kinematics.GaussHermite method) set_default_hist_width() (kinematics.BayesLOSVD method) (kinematics.GaussHermite method) set_filename() (model.AllModels method) set_mean_v_and_sig_v_per_aperture() (kinematics.BayesLOSVD method) set_threshold_del_chi2() (config_reader.Configuration method) Settings (class in config_reader) setup_directories() (model.Model method)

shiftedColorMap() (plotter.Plotter method) solve() (weight_solvers.LegacyWeightSolver method) (weight_solvers.NNLS method) (weight_solvers.WeightSolver method) specific_generate_method() (parameter_space.FullGrid method) (parameter_space.GridWalk method) (parameter_space.LegacyGridSearch method) (parameter_space.ParameterGenerator method) (parameter_space.SpecificModels method) SpecificModels (class in parameter_space) SplitModelIterator (class in model_iterator) standardise_velocities() (kinematics.GaussHermite method) suggest_parameter_values() (physical_system.TriaxialVisibleComponent method) System (class in physical_system)

T

transform_orblib_to_observables() (kinematics.BayesLOSVD method) (kinematics.GaussHermite method) (kinematics.Kinematics method)

triax_pqu2tpp() (physical_system.TriaxialVisibleComponent method) TriaxialCoredLogPotential (class in physical_system) TriaxialVisibleComponent (class in physical_system)

U

UniqueKeyLoader (class in config_reader) update() (kinematics.Kinematics method) (parameter_space.Parameter method)

update_model_table() (model.AllModels method)

V

validate() (config_reader.Configuration method) (config_reader.Settings method) (parameter_space.Parameter method) (physical_system.AxisymmetricVisibleComponent method) (physical_system.Component method) (physical_system.GeneralisedNFW method) (physical_system.Hernquist method) (physical_system.NFW method) (physical_system.NFW_m200_c method) (physical_system.Plummer method) (physical_system.System method) (physical_system.TriaxialCoredLogPotential method) (physical_system.TriaxialVisibleComponent method) (physical_system.VisibleComponent method)

validate_chi2() (config_reader.Configuration method) validate_config_file() (model.Model method) validate_parset() (parameter_space.ParameterSpace method) (physical_system.BarDiskComponentAngles method) (physical_system.Component method) (physical_system.GeneralisedNFW method) (physical_system.System method) (physical_system.TriaxialVisibleComponent method) validate_parspace() (parameter_space.ParameterSpace method) validate_q_values() (mges.MGE method) VisibleComponent (class in physical_system)

W

weight_file_exists() (weight_solvers.WeightSolver method) weight_solvers module WeightSolver (class in weight_solvers) write_aperture_and_bin_files() (kinematics.BayesLOSVD method)

write_executable_for_ics() (orblib.LegacyOrbitLibrary method) write_executable_for_integrate_orbits() (orblib.LegacyOrbitLibrary method) write_executable_for_integrate_orbits_par() (orblib.LegacyOrbitLibrary method) write_executable_for_weight_solver() (weight_solvers.LegacyWeightSolver method) write_losvds_to_ecsv_format() (kinematics.BayesLOSVD method) write_output_to_all_models_table() (model_iterator.ModelInnerIterator method)